Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs28737302 | chr15:41469943 | G/A | 0.000287 | 490 | 15.23 | 15.9 | 17.6 | KM Plot |
| THCA | rs2874642 | chr6:79496184 | A/G | 1.5E-6 | 489 | 18.8 | 17.7 | 15.63 | KM Plot |
| THCA | rs28750173 | chr16:20624109 | A/G | 4.12E-6 | 486 | 15.9 | 17.63 | 14.27 | KM Plot |
| THCA | rs28750277 | chr7:76421368 | G/A | 1.94E-6 | 475 | 15.67 | 17.1 | 15.67 | KM Plot |
| THCA | rs28757782 | chr14:36043941 | G/A | 5.27E-6 | 487 | 16.2 | 16.22 | 8.33 | KM Plot |
| THCA | rs2877612 | chr14:24735624 | A/G | 0.000215 | 486 | 16.47 | 15.23 | 16.67 | KM Plot |
| THCA | rs28786544 | chr14:36067553 | G/C | 5.19E-6 | 488 | 16.08 | 16.22 | 8.33 | KM Plot |
| THCA | rs28831831 | chr6:79430002 | T/C | 4.47E-6 | 481 | 15.9 | 16.8 | 17.15 | KM Plot |
| THCA | rs2883897 | chr16:20862177 | G/A | 9.15E-5 | 490 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs28844695 | chr14:36061838 | C/G | 5.12E-6 | 489 | 15.93 | 16.37 | 8.33 | KM Plot |
| THCA | rs28846971 | chr9:36026705 | C/T | 9.08E-6 | 472 | 15.9 | 15.08 | 17.93 | KM Plot |
| THCA | rs28856334 | chr4:1178596 | G/T | 5.8E-6 | 480 | 16.37 | 14.8 | 3.8 | KM Plot |
| THCA | rs28864732 | chr14:36268629 | G/A | 5.07E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs28866311 | chr15:41442195 | T/G | 0.00024 | 468 | 14.57 | 16.37 | 16.83 | KM Plot |
| THCA | rs2887532 | chr12:1051495 | C/T | 0.000114 | 473 | 16.37 | 15.43 | 9.32 | KM Plot |